Genomic Algorithms

We previously taught a course in the FU Master's Program in Bioinformatics (CUB848) on genomic algorithms (2014-2016). The course was part of Institute of Bioinformatics at the Department of Computer Science and Mathematics of the Free Univerity of Berlin The slides are provided here but this course is currently not being held. A German language course on Genetics was taught in the Bachelor's program (see below).

Lecture Slides

• Lecture 1: NGS methodology.
• Lecture 2: Genome assembly (1).
• Lecture 3: Genome assembly (2).
• Lecture 4: Read mapping (1).
• Lecture 5: Read mapping (2).
• Lecture 6: Variant calling (1).
• Lecture 7: Variant calling (2).
• Lecture 8: WGS and structural variation (1).
• Lecture 9: WGS and structural variation (2).
• Lecture 10: RNA-seq (1).
• Lecture 11: RNA-seq (2): January 5, 2016.
• Lecture 12: ChIP-seq (1).
• Lecture 13: ChIP-seq (2).
• Lecture 14: CCC.

Exercises

• Exercise 1 (NGS Methodology).
• Exercise 2 (Genome Assembly).
• Exercise X (ChIP-seq, PCA).

Additional Material

• Practical exercise: G/C content and Read Depth in WGS CNV analysis.